PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.267170.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 212aa    MW: 23304.7 Da    PI: 10.0251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.267170.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.1e-1155102454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ +++L
  Cucsa.267170.2  55 SKACREKLRRDRLNDKFLELGSILDPG---RPPKTDKAAILVDAVRMVNQL 102
                     6789**********************8...89***************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1351122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.28751102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-855102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1355125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-857108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-759107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGISRSRAQA SLGLFSPLTA PMIPEIDGSL ADLDGHLESG SKKRVRSDSC SASSSKACRE  60
KLRRDRLNDK FLELGSILDP GRPPKTDKAA ILVDAVRMVN QLRGETEKLK ESNSSLQEKI  120
KELKAEKNEL RDEKQRLKAD KERLEQQVKS MPAQQPGFLP PPIPTFPAQG QAPGNKLFPF  180
IGYHPSVAMW QFMPPAAVDT SQDHVLRPPV A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818261e-127LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132581e-127LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151962.21e-132PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-93ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0A0L7N81e-132A0A0A0L7N8_CUCSA; Uncharacterized protein
STRINGVIT_19s0014g05100.t019e-98(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-80bHLH family protein